Profile microbial communities from amplicon and shotgun data: taxonomy, function, and ecological inference.
A baseline path through this sector with milestones, prerequisites, and concrete projects. Click Personalize this roadmap above to have the AI tailor pace, depth, and resources to your background and goals.
Build the conceptual and quantitative base needed to read papers and follow tutorials in the sector.
Walk through a published tutorial in QIIME2 and reproduce its results on the provided sample data.
Deliverable: GitHub repo with a Jupyter/Quarto notebook, environment.yml, and README
Learn the standard analytical stack of the sector and the canonical public datasets used by professionals.
Pick one study from MGnify, reproduce the headline result, and write a short technical note on what you found.
Deliverable: GitHub repo + 3-page PDF write-up
Move from tutorials to original analyses on real questions. Start showing your work publicly.
Take a public 16S study with two conditions, run a QIIME2 pipeline, and produce differential-abundance and diversity analyses.
Deliverable: QIIME2 visualization bundle + notebook + short report
Package your work, target real roles, and prepare to interview in the sector.
Curate 2–3 of your strongest sector projects into a portfolio site with clear case-study writeups, plus a 1-page CV tailored to the target role.
Deliverable: Live portfolio URL + PDF CV + cover letter template
Verified, canonical resources from the official providers in this sector. The AI roadmap builder draws from this same library when it personalizes your roadmap.
Runs end-to-end microbiome analyses for research or clinical projects.
Builds shotgun metagenomic pipelines and interprets functional profiles.
Answer a short profile and the AI builder will tailor every phase — pace, hours, tools, and resources — to your background and goals in this sector.
Build my personalized roadmap